EpiRegioDB
latest
About EpiRegio Web Server
Overview of possible queries
Learning of Regulatory EleMents (REMs)
Cluster of regulatory elements
Data preprocessing for the EpiRegio webserver
Future releases
Cite Us
Query Guide
Application scenarios
REST API
Known Issues
EpiRegioDB
Docs
»
EpiRegio: Analysis and retrieval of regulatory elements linked to genes
Edit on GitHub
EpiRegio
: Analysis and retrieval of regulatory elements linked to genes
¶
About EpiRegio Web Server
Overview of possible queries
Learning of Regulatory EleMents (REMs)
Cluster of regulatory elements
Data preprocessing for the EpiRegio webserver
Future releases
Cite Us
Query Guide
Gene Query
Region Query
REM Query
Interactive tables
Examples file upload
Available cell and tissue types
Results in detail
Gene ID and symbol
REM ID
Predicted function
Model score
Cluster of REMs (CREM) ID
Number of REMs per CREM
Cell type score
Cell type DNase1 signal
Application scenarios
How to use EpiRegio to identify TF’s target genes using ChIP-seq peak regions
How to use EpiRegio to identify enriched TFs of a set of genes of interest
How to use EpiRegio to identify TF-binding sites within REMs of a gene of interest
REST API
General Information
GeneQuery
Example
RegionQuery
Example:
REMQuery:
Example:
CREMQuery
Example:
GeneInfo
Example:
Programmatic access via Python
Known Issues
Layout issues
Server Error (500)
The issue with the gene name – ensembl id mapping
Read the Docs
v: latest
Versions
latest
stable
Downloads
pdf
html
epub
On Read the Docs
Project Home
Builds
Free document hosting provided by
Read the Docs
.